PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G169500.1
Common NameB456_013G169500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 163aa    MW: 17925.9 Da    PI: 7.2624
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G169500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-191666256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr ++ +gr++AeIrdp+    r +r++lg+f+ ae+Aa+a++aa+++++g+
  Gorai.013G169500.1 16 RYRGVRKRP-WGRYAAEIRDPR----RkTRVWLGTFDKAEDAARAYDAAAREFRGA 66
                        59*******.**********83....36*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.14E-181675No hitNo description
Gene3DG3DSA:3.30.730.101.5E-311675IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-221674IPR016177DNA-binding domain
PROSITE profilePS5103223.5251673IPR001471AP2/ERF domain
SMARTSM003801.0E-321679IPR001471AP2/ERF domain
PfamPF008479.2E-131665IPR001471AP2/ERF domain
PRINTSPR003671.1E-101728IPR001471AP2/ERF domain
PRINTSPR003671.1E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MAPRSKPIDP NSMEIRYRGV RKRPWGRYAA EIRDPRRKTR VWLGTFDKAE DAARAYDAAA  60
REFRGAKAKT NFADSDFTRS PSHSSTVESS SPPPPLDLTL AVTANRPQFF FDAFASAGSG  120
CPLSCGSQSD TDSSSWVVDF EEGGVQVREF DVDLNKLPAE MN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-181772662ATERF1
3gcc_A2e-181772662ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465968.11e-115PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotO803407e-40ERF78_ARATH; Ethylene-responsive transcription factor 4
TrEMBLA0A0D2VGM61e-116A0A0D2VGM6_G
STRINGscaffold_301765.17e-41(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.14e-24ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]